Bioinformatics MCQs
Bioinformatics MCQs — Part 1 (Q1–Q25)
Q1. Bioinformatics is best defined as:
A. The study of living organisms
B. Analysis of chemical reactions in cells
C. Application of computational tools to manage and analyze biological data ✅
D. Study of anatomy and physiology
- A/D: Too general.
- B: Biochemistry, not bioinformatics.
- C: Bioinformatics integrates biology, computer science, and statistics to interpret biological data.
Q2. The primary international DNA sequence database is:
A. Swiss-Prot
B. GenBank ✅
C. PDB
D. Pfam
- A: Swiss-Prot = proteins.
- B: GenBank (NCBI) is a comprehensive nucleotide sequence database.
- C: Protein structures.
- D: Protein families.
Q3. Which database is known for storing 3D structures of proteins?
A. GenBank
B. Protein Data Bank (PDB) ✅
C. KEGG
D. ENSEMBL
- A: Nucleotide sequences.
- B: PDB archives experimentally determined 3D biomolecular structures.
- C: Pathway database.
- D: Genome annotations.
Q4. BLAST stands for:
A. Basic Local Alignment Search Theory
B. Basic Local Alignment Search Tool ✅
C. Biological Linkage and Structure Test
D. Bioinformatics Learning and Analysis Software
- B: BLAST is a widely used tool for sequence similarity searching.
Q5. Which algorithm is most commonly used for multiple sequence alignment?
A. BLAST
B. FASTA
C. ClustalW ✅
D. PCR
- A/B: For pairwise alignment.
- C: ClustalW aligns multiple sequences at once.
- D: PCR amplifies DNA, not an alignment algorithm.
Q6. Which bioinformatics database provides information about metabolic pathways?
A. GenBank
B. KEGG (Kyoto Encyclopedia of Genes and Genomes) ✅
C. Swiss-Prot
D. OMIM
- A: Nucleotides.
- B: KEGG maps pathways, genomes, diseases, drugs.
- C: Protein sequences.
- D: Genetic disorders.
Q7. The FASTA format is used to:
A. Visualize proteins in 3D
B. Store chromatogram data
C. Represent nucleotide or protein sequences in plain text ✅
D. Analyze protein domains
- C: FASTA uses “>” header lines followed by sequence data.
Q8. The process of comparing DNA or protein sequences to identify regions of similarity is called:
A. Annotation
B. Sequence alignment ✅
C. Hybridization
D. Simulation
- A: Annotation assigns functions.
- B: Alignment compares sequences to study similarity and function.
- C: Experimental technique.
- D: Not the correct term.
Q9. Which of the following is a primary protein sequence database?
A. KEGG
B. UniProtKB/Swiss-Prot ✅
C. STRING
D. RCSB PDB
- A: Pathways.
- B: UniProtKB/Swiss-Prot provides manually curated protein sequence/function data.
- C: Protein interactions.
- D: Structures.
Q10. Homology modeling in bioinformatics predicts:
A. RNA folding
B. 3D structure of a protein based on known homologous structures ✅
C. Protein expression levels
D. Metabolic flux
- B: Homology modeling uses sequence similarity to predict unknown structures.
Q11. Which file format is standard for storing 3D coordinates of biomolecules?
A. FASTA
B. PDB format ✅
C. BED
D. SAM
- A: Sequences.
- B: PDB files list atomic coordinates of structures.
- C/D: Genomics formats, not structure.
Q12. The central dogma of bioinformatics relates to:
A. Cell signaling
B. Flow of biological information: DNA → RNA → Protein ✅
C. Photosynthesis
D. Enzyme catalysis
- B: Bioinformatics databases and tools analyze each step of the central dogma.
Q13. Which is a secondary structure prediction method?
A. SWISS-MODEL
B. Chou-Fasman algorithm ✅
C. BLAST
D. PCR
- A: Homology modeling.
- B: Chou-Fasman predicts α-helices, β-sheets.
- C/D: Not secondary structure methods.
Q14. The E-value in BLAST indicates:
A. Protein expression level
B. Expected number of matches by chance ✅
C. Number of exons
D. PCR efficiency
- B: Lower E-value → more significant alignment.
Q15. Which bioinformatics tool is used for phylogenetic tree construction?
A. PCR
B. MEGA (Molecular Evolutionary Genetics Analysis) ✅
C. SDS-PAGE
D. ELISA
- A/C/D: Not bioinformatics tools.
- B: MEGA builds phylogenetic trees from sequence data.
Q16. Hidden Markov Models (HMMs) are widely used in:
A. Gene therapy
B. Protein family/domain prediction (Pfam) ✅
C. PCR
D. Southern blotting
- B: HMMs identify conserved motifs/domains in protein families.
Q17. A contig in genome assembly is:
A. A protein interaction
B. Overlapping DNA sequence fragments combined into one continuous sequence ✅
C. A metabolic pathway
D. A phylogenetic branch
- B: Contigs result from assembling short reads into longer stretches.
Q18. The Human Genome Project used mainly:
A. Nanopore sequencing
B. Sanger sequencing ✅
C. Illumina sequencing
D. PacBio
- B: HGP relied on Sanger sequencing (hierarchical approach).
Q19. Which database is specifically for genetic disorders?
A. PDB
B. KEGG
C. OMIM (Online Mendelian Inheritance in Man) ✅
D. UniProt
- A/B/D: Other focuses.
- C: OMIM catalogs human genes and genetic diseases.
Q20. A motif in bioinformatics refers to:
A. RNA codon
B. Short conserved sequence or structural pattern with biological significance ✅
C. Whole chromosome
D. Gene cluster
- B: Motifs often indicate functional sites like binding domains.
Q21. Which alignment method allows gaps and mismatches?
A. Dot plot only
B. Restriction mapping
C. Dynamic programming (Needleman-Wunsch, Smith-Waterman) ✅
D. PCR
- A: Visualization method.
- C: DP algorithms optimize alignments with gaps/mismatches.
Q22. Which bioinformatics technique identifies orthologs across species?
A. PCR
B. Comparative genomics ✅
C. Western blot
D. ELISA
- B: Comparative genomics detects orthologous genes from common ancestry.
Q23. A heatmap in bioinformatics typically represents:
A. DNA replication
B. Expression levels of genes/proteins across samples ✅
C. Protein folding
D. RNA splicing
- B: Heatmaps visualize high-throughput omics data.
Q24. The codon table is used to:
A. Identify introns
B. Translate nucleotide triplets (codons) into amino acids ✅
C. Align sequences
D. Build databases
- B: Codon table relates RNA codons to amino acids.
Q25. Which of the following is a pairwise sequence alignment tool?
A. MEGA
B. FASTA ✅
C. KEGG
D. STRING
- A: Phylogenetics.
- B: FASTA performs pairwise alignment (query vs database).
- C: Pathways.
- D: Protein interactions.
Bioinformatics MCQs — Part 2 (Q26–Q50)
Q26. Which is a sequence alignment scoring matrix used in bioinformatics?
A. FASTA
B. PAM / BLOSUM ✅
C. PDB
D. PCR
- A: FASTA = tool, not a matrix.
- B: PAM and BLOSUM are substitution matrices for alignment scoring.
- C: Structure database.
- D: DNA amplification technique.
Q27. The Smith–Waterman algorithm is used for:
A. Genome assembly
B. Local sequence alignment ✅
C. Protein structure prediction
D. DNA replication studies
- A/D: Not alignment.
- B: Smith–Waterman finds the best local (subsequence) alignment.
- C: Separate area.
Q28. Which genome assembly method breaks DNA into overlapping reads and reconstructs sequence?
A. PCR
B. Shotgun sequencing ✅
C. Microarray hybridization
D. RFLP
- A/C/D: Not genome assembly.
- B: Shotgun sequencing fragments DNA randomly → computational assembly.
Q29. Ensembl database provides:
A. Protein 3D structures
B. Genome annotations for vertebrates and model organisms ✅
C. Metabolic pathways
D. SNP haplotypes
- A: PDB does this.
- B: Ensembl provides integrated genome annotation resources.
- C: KEGG.
- D: HapMap Project.
Q30. Which algorithm is used for global alignment?
A. Needleman–Wunsch ✅
B. Smith–Waterman
C. BLAST
D. FASTA
- A: Needleman–Wunsch aligns sequences end-to-end (global).
- B: Local.
- C/D: Heuristic/fast alignment, not exact global.
Q31. Which file format is used for storing high-throughput sequencing reads?
A. PDB
B. FASTQ ✅
C. BED
D. CSV
- A: Protein structures.
- B: FASTQ stores sequences + quality scores.
- C: Genomic intervals.
- D: General text data.
Q32. A phylogenetic tree shows:
A. Protein folding steps
B. RNA transcription sites
C. Evolutionary relationships among sequences or species ✅
D. Enzyme kinetics
- C: Phylogenetics reconstructs evolutionary history using sequence data.
Q33. Which bioinformatics tool is used for protein domain and motif analysis?
A. BLASTn
B. Pfam / PROSITE ✅
C. FASTA
D. ELISA
- A: Nucleotide search.
- B: Pfam/PROSITE specialize in motif/domain identification.
- C: Pairwise alignment.
- D: Immunoassay.
Q34. The NCBI provides all EXCEPT:
A. BLAST
B. GenBank
C. PubMed
D. Cryo-EM imaging ✅
- A/B/C: Major NCBI services.
- D: Imaging is experimental, not NCBI’s role.
Q35. Which technique is used for gene expression profiling?
A. PCR only
B. Microarrays / RNA-Seq ✅
C. Restriction digestion
D. X-ray crystallography
- A: Too limited.
- B: Microarrays and RNA-Seq provide genome-wide expression profiles.
- C/D: Not expression tools.
Q36. The HapMap Project aimed to:
A. Sequence all proteins
B. Catalog common human genetic variations (SNPs) ✅
C. Discover RNA modifications
D. Analyze proteomes
- A/C/D: Not HapMap focus.
- B: HapMap mapped SNP haplotype blocks for disease studies.
Q37. Which software is widely used for visualizing DNA sequence chromatograms?
A. Rasmol
B. Chromas / FinchTV ✅
C. BLAST
D. FASTA
- A: Protein 3D viewer.
- B: Chromas/FinchTV display raw Sanger sequencing chromatograms.
- C/D: Alignment tools.
Q38. The central role of bioinformatics in drug discovery is:
A. Conducting surgeries
B. Identifying drug targets and virtual screening ✅
C. Manufacturing vaccines
D. Clinical trials
- A/C/D: Downstream processes.
- B: Bioinformatics aids in in-silico target identification and screening.
Q39. Which sequencing method produces short high-throughput reads?
A. Sanger
B. Illumina sequencing ✅
C. Nanopore
D. PacBio
- A: Long accurate reads but low throughput.
- B: Illumina generates millions of short reads (100–300 bp).
- C/D: Long-read platforms.
Q40. Metagenomics is the study of:
A. Protein folding
B. Genomes of microbial communities directly from environments ✅
C. Human diseases only
D. Chromosome structure
- B: Metagenomics bypasses culturing and sequences whole microbial communities.
Q41. Which database is dedicated to protein–protein interactions?
A. PDB
B. STRING / BioGRID ✅
C. KEGG
D. OMIM
- A: Structures.
- B: STRING, BioGRID store interaction networks.
- C: Pathways.
- D: Genetic disorders.
Q42. Which file format is used to describe genomic intervals and features?
A. PDB
B. FASTQ
C. BED / GFF ✅
D. CSV
- A/B: Not genomic intervals.
- C: BED and GFF store genomic coordinates and annotations.
- D: General table.
Q43. Which method predicts protein tertiary structure without a template?
A. Homology modeling
B. Ab initio modeling ✅
C. Molecular docking
D. Southern blotting
- A: Template-based.
- B: Ab initio builds structures from physical principles alone.
- C: Studies binding.
- D: DNA detection.
Q44. The RCSB PDB provides:
A. DNA sequences
B. Protein 3D structures ✅
C. SNP databases
D. RNA-Seq data
- A/C/D: Not correct.
- B: RCSB PDB hosts biomolecular structures worldwide.
Q45. Which algorithm is most suitable for gene prediction?
A. Needleman-Wunsch
B. Smith-Waterman
C. Hidden Markov Models (HMMs) ✅
D. PCR
- A/B: Alignment algorithms.
- C: HMMs are widely used for ab initio gene prediction.
- D: Lab technique.
Q46. The 1000 Genomes Project aimed to:
A. Sequence plant genomes
B. Provide a deep catalog of human genetic variation ✅
C. Identify proteins in plasma
D. Annotate pathways
- A/C/D: Other areas.
- B: 1000 Genomes studied global human genetic diversity.
Q47. Orthologous genes are:
A. From gene duplication within species
B. Genes in different species derived from a common ancestor ✅
C. Non-functional pseudogenes
D. Genes with identical sequences only
- A: Those are paralogs.
- B: Orthologs arise from speciation events.
- C/D: Too narrow.
Q48. Paralogous genes result from:
A. Horizontal gene transfer
B. Gene duplication within the same species ✅
C. Mutation of introns
D. Viral integration
- A/D: Different processes.
- B: Paralogs = duplicated genes within a genome.
- C: Not relevant.
Q49. Which is the standard format for storing sequence alignments?
A. CSV
B. CLUSTAL or MSF formats ✅
C. BED
D. SAM
- A: General tables.
- B: CLUSTAL/MSF are common alignment formats.
- C/D: Genomic intervals/alignments of reads, not MSAs.
Q50. Docking studies in bioinformatics are primarily used to:
A. Study DNA replication
B. Predict binding of ligands to proteins ✅
C. Sequence nucleotides
D. Design microarrays
- A/C/D: Not docking.
- B: Molecular docking predicts drug–protein binding modes.
Bioinformatics MCQs — Part 3 (Q51–Q75)
Q51. The primary structure of a protein refers to:
A. α-helices and β-sheets
B. Protein domains
C. 3D folding pattern
D. Linear sequence of amino acids ✅
- A: That’s secondary structure.
- B: Domains = higher-level units.
- C: Tertiary structure.
- D: Primary = amino acid sequence.
Q52. Which of the following tools is used for RNA secondary structure prediction?
A. BLAST
B. mfold / RNAfold ✅
C. PDB
D. FASTA
- A/D: Sequence alignment.
- B: mfold/RNAfold predict RNA stem–loop and folding patterns.
- C: Protein structures.
Q53. The Gene Ontology (GO) project classifies genes into:
A. Only sequence families
B. Biological process, molecular function, cellular component ✅
C. Protein tertiary structures
D. Expression levels
- B: GO provides consistent vocab for gene/protein functions.
Q54. Which machine learning method is widely used in bioinformatics?
A. PCR
B. Support Vector Machines (SVMs) ✅
C. SDS-PAGE
D. qRT-PCR
- A/C/D: Wet-lab methods.
- B: SVMs classify biological data (e.g., gene expression profiles).
Q55. Molecular docking involves:
A. Aligning DNA sequences
B. Predicting orientation of ligand binding to protein ✅
C. RNA splicing
D. Electrophoresis
- B: Used in drug discovery to predict binding affinity.
Q56. Which bioinformatics database is specifically for protein families and domains?
A. KEGG
B. GenBank
C. Pfam ✅
D. PDB
- A/B/D: Not protein families.
- C: Pfam uses HMM profiles for protein domain classification.
Q57. Entropy in bioinformatics sequence analysis is used to:
A. Detect DNA replication
B. Measure variability at sequence positions (information content) ✅
C. Sequence RNA
D. Fold proteins
- B: High entropy = variable region; low entropy = conserved region.
Q58. Sequence annotation refers to:
A. DNA amplification
B. Assigning biological meaning (genes, exons, regulatory sites) to sequences ✅
C. RNA hybridization
D. Protein purification
- B: Annotation links raw sequence data to functional information.
Q59. The Swiss-Prot database is known for:
A. DNA sequences
B. Manually curated protein sequences with functional info ✅
C. Protein–protein interactions only
D. Genomic intervals
- B: Swiss-Prot emphasizes accuracy and annotation quality.
Q60. Which is an ab initio gene prediction tool?
A. BLAST
B. GENSCAN ✅
C. PDB
D. ELISA
- A: Similarity search.
- B: GENSCAN predicts genes from sequence features alone.
- C/D: Not prediction tools.
Q61. The FAIR principles in bioinformatics stand for:
A. Fast, Accurate, Integrated, Reliable
B. Findable, Accessible, Interoperable, Reusable ✅
C. Flexible, Automated, Intelligent, Robust
D. First, Accurate, Indexed, Readable
- B: FAIR guides data management in life sciences.
Q62. Which programming language is MOST widely used in bioinformatics?
A. Pascal
B. Python / R ✅
C. Fortran
D. BASIC
- A/C/D: Historical but uncommon today.
- B: Python and R dominate due to rich bioinformatics libraries.
Q63. Multiple sequence alignment (MSA) helps in:
A. PCR amplification
B. Detecting conserved regions and evolutionary relationships ✅
C. RNA editing
D. Protein purification
- B: MSA identifies conserved motifs/domains → evolutionary insights.
Q64. The ExPASy server is known for:
A. DNA sequencing services
B. Proteomics and protein analysis tools ✅
C. RNA editing
D. Plant genome annotation
- B: ExPASy hosts proteomics and protein bioinformatics resources.
Q65. The motif-finding tool MEME is used to:
A. Translate DNA to protein
B. Discover novel sequence motifs in DNA/protein datasets ✅
C. Predict protein folding
D. Visualize 3D models
- B: MEME identifies recurring conserved motifs in sequence data.
Q66. Which format is commonly used for storing aligned sequencing reads?
A. PDB
B. FASTA
C. SAM/BAM ✅
D. CSV
- A/B/D: Other data formats.
- C: SAM/BAM store aligned NGS reads with metadata.
Q67. The Central Dogma of molecular biology is reflected in bioinformatics as:
A. DNA → Proteins only
B. DNA → RNA → Proteins → Bioinformatics data ✅
C. Proteins → RNA → DNA
D. DNA replication → division
- B: Bioinformatics tools analyze each level of the dogma.
Q68. Molecular dynamics simulations study:
A. DNA replication
B. Protein and biomolecule motions over time ✅
C. PCR amplification
D. Phylogenetic relationships
- B: MD simulates atomic motions → protein folding, stability, drug binding.
Q69. Which bioinformatics resource provides orthology and phylogeny data?
A. PDB
B. OrthoDB / EggNOG ✅
C. PubMed
D. Swiss-Prot
- B: OrthoDB/EggNOG group orthologous genes and evolutionary histories.
Q70. GWAS (Genome-Wide Association Study) identifies:
A. Protein folding pathways
B. Genetic variants linked to traits/diseases ✅
C. RNA transcription sites
D. Protein secondary structures
- B: GWAS compares genomes to find SNPs associated with phenotypes.
Q71. Which visualization tool is widely used for phylogenetic trees?
A. BLAST
B. FigTree / iTOL ✅
C. FASTA
D. ELISA
- B: FigTree and iTOL generate interactive tree visualizations.
Q72. The BED format in genomics describes:
A. Protein folding
B. RNA motifs
C. Chromosomal intervals/features (start, end, annotation) ✅
D. Protein interactions
- C: BED = genomic intervals (e.g., exons, peaks).
Q73. Docking score in molecular docking represents:
A. GC content
B. Binding affinity between ligand and protein ✅
C. RNA expression level
D. DNA replication fidelity
- B: Lower docking score → stronger predicted binding.
Q74. Which project mapped all functional DNA elements in the human genome?
A. 1000 Genomes Project
B. HapMap Project
C. ENCODE Project ✅
D. Human Proteome Project
- C: ENCODE aimed to identify all coding and non-coding functional DNA regions.
Q75. A SNP (Single Nucleotide Polymorphism) is:
A. A change in protein folding
B. A variation of a single base in DNA sequence among individuals ✅
C. RNA splicing error
D. Chromosome duplication
- B: SNPs are the most common form of genetic variation.
Bioinformatics MCQs — Part 4 (Q76–Q100)
Q76. Which software is widely used for molecular visualization of proteins?
A. FASTA
B. PyMOL / RasMol ✅
C. BLAST
D. PCR
- A/C/D: Not visualization tools.
- B: PyMOL and RasMol display 3D molecular structures.
Q77. STRING database is mainly used to study:
A. Gene sequences
B. Protein–protein interaction networks ✅
C. RNA secondary structures
D. Phylogenetic trees
- B: STRING integrates known and predicted protein interaction data.
Q78. Which tool is best for next-generation sequencing (NGS) read alignment?
A. BLASTp
B. Bowtie / BWA ✅
C. SDS-PAGE
D. qPCR
- A: Protein similarity, not read alignment.
- B: Bowtie and BWA are popular aligners for short NGS reads.
Q79. Which bioinformatics database links genes to diseases?
A. PDB
B. OMIM (Online Mendelian Inheritance in Man) ✅
C. Pfam
D. Swiss-Prot
- B: OMIM catalogs gene–disease relationships in humans.
Q80. A motif logo (sequence logo) graphically shows:
A. RNA transcription
B. Conserved sequence positions and variability ✅
C. Protein folding kinetics
D. PCR amplification
- B: Sequence logos visualize information content at each alignment position.
Q81. Molecular docking is most important in:
A. Agriculture only
B. Rational drug design ✅
C. Chromosome mapping
D. RNA splicing
- B: Docking simulates drug binding to target proteins.
Q82. Epigenomics studies:
A. Gene mutations only
B. RNA editing
C. Genome-wide DNA/histone modifications without changing sequence ✅
D. Protein folding
- C: Epigenomics studies methylation, acetylation, histone modifications.
Q83. Which sequencing platform produces long reads?
A. Illumina
B. PacBio / Oxford Nanopore ✅
C. qPCR
D. Microarray
- A: Short reads.
- B: PacBio and Nanopore are long-read sequencing technologies.
Q84. Which project aimed to catalog the human microbiome?
A. ENCODE Project
B. HapMap Project
C. Human Microbiome Project (HMP) ✅
D. 1000 Genomes
- C: HMP studied microbial communities in human body sites.
Q85. Systems biology integrates:
A. DNA replication
B. Genomics, transcriptomics, proteomics, metabolomics to study networks ✅
C. RNA transcription only
D. Chromosome number
- B: Systems biology unifies multiple omics for holistic analysis.
Q86. The motif-finding tool MEME identifies:
A. 3D protein folding
B. Conserved sequence motifs in DNA/proteins ✅
C. SNP haplotypes
D. RNA splicing errors
- B: MEME detects recurring conserved motifs in biological sequences.
Q87. CADD scores in bioinformatics predict:
A. RNA editing frequency
B. Pathogenicity of genetic variants ✅
C. Protein folding kinetics
D. Microbial diversity
- B: CADD integrates data to rank variants by potential deleteriousness.
Q88. Hidden Markov Models (HMMs) are important in:
A. PCR
B. Gene prediction and protein domain analysis ✅
C. RNA transcription
D. Protein crystallization
- B: HMMs are statistical models for sequence annotation and domain prediction.
Q89. Which format is standard for next-generation sequencing alignments?
A. PDB
B. BAM / SAM ✅
C. BED
D. CSV
- A: Protein structures.
- B: SAM/BAM store read alignments.
- C: Genomic intervals.
- D: General text tables.
Q90. Transcriptomics studies:
A. Protein folding
B. DNA replication
C. All RNA transcripts expressed in a cell/tissue ✅
D. Epigenetic modifications
- C: Transcriptomics captures mRNA, rRNA, ncRNA profiles.
Q91. Virtual screening in drug discovery uses:
A. PCR
B. In-silico docking of compound libraries ✅
C. Gel electrophoresis
D. DNA hybridization
- B: Virtual screening computationally evaluates compound libraries for binding.
Q92. Which is the most common programming language for NGS data pipelines?
A. BASIC
B. Python / R ✅
C. Pascal
D. COBOL
- B: Python and R dominate bioinformatics due to libraries like Biopython, Bioconductor.
Q93. Genome browsers like UCSC and Ensembl allow users to:
A. Amplify DNA
B. Visualize annotated genomes with tracks and features ✅
C. Fold proteins
D. Perform PCR
- B: Genome browsers integrate annotation, alignments, and visualization.
Q94. Which project first published the draft human genome sequence?
A. ENCODE Project
B. Human Genome Project (2001) ✅
C. HapMap Project
D. 1000 Genomes
- B: Draft genome published in 2001; completed in 2003.
Q95. The PAM matrix is based on:
A. Random alignments
B. Observed substitutions per 100 amino acids (evolutionary distance) ✅
C. GC content
D. Hydrophobicity
- B: PAM = Point Accepted Mutation matrix, evolutionary model.
Q96. BLOSUM matrices are built from:
A. PCR products
B. Observed substitutions in conserved blocks of alignments ✅
C. Protein 3D models
D. RNA splicing
- B: BLOSUM is built from conserved blocks of protein alignments.
Q97. Which approach detects differentially expressed genes?
A. PCR
B. RNA-Seq / Microarray analysis ✅
C. X-ray crystallography
D. Southern blot
- B: RNA-Seq and microarrays compare gene expression across conditions.
Q98. Proteogenomics integrates:
A. RNA editing with SNPs
B. Proteomics data with genomic/transcriptomic information ✅
C. Protein folding with docking
D. DNA repair studies
- B: Proteogenomics refines genome annotation using proteomics evidence.
Q99. Machine learning in bioinformatics is applied to:
A. DNA amplification
B. Predict gene functions, classify expression patterns, detect variants ✅
C. RNA splicing
D. Gel electrophoresis
- B: ML is essential for pattern recognition and predictions in bioinformatics.
Q100. The ultimate goal of bioinformatics is to:
A. Sequence DNA only
B. Extract meaningful biological knowledge from complex datasets ✅
C. Replace lab experiments entirely
D. Store data without analysis
- A/D: Too narrow.
- C: Complements, not replaces, experiments.
- B: Bioinformatics transforms raw data into biological insights.
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